|
| Status |
Public on Apr 03, 2018 |
| Title |
WT-MOCK rep1 |
| Sample type |
SRA |
| |
|
| Source name |
keratinocyte
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: skin
age: post natal day 1
genotype: wild type
cell type: keratinocyte
|
| Treatment protocol |
Cells were then stimulated with or without IL-25 (Biolegend) for 8hrs.
|
| Growth protocol |
Skin tissues from newborn C57BL/6 mice were obtained for primary keratinocyte culture with medium M154CF
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNAs were isolated with RNAprep pure Tissue Kit (DP431)
The RNA-seq library was prepared by the Beijing Genomics Institute.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
Basecalls performed using Zebracall process version 0.5.0.13875
Adaptors were trimmed and low quality reads were filtered to get clean reads, then mapped to mm10 genome using hisat2.
featureCounts program was used for reads summarization and Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample
|
| |
|
| Submission date |
Jan 30, 2018 |
| Last update date |
Apr 03, 2018 |
| Contact name |
Chen Dong |
| Organization name |
Tsinghua University
|
| Department |
Institute for Immunology and School of Medicine
|
| Lab |
Dongchen's lab
|
| Street address |
Haidian District
|
| City |
Beijing |
| ZIP/Postal code |
100084 |
| Country |
China |
| |
|
| Platform ID |
GPL23479 |
| Series (1) |
| GSE109833 |
Global gene expression profile of primary cultured keratinocytes with or without stimulation |
|
| Relations |
| BioSample |
SAMN08435721 |
| SRA |
SRX3630162 |
