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Sample GSM296394 Query DataSets for GSM296394
Status Public on Jun 07, 2008
Title gene expression in GV oocyte from aged mice, replicate 1
Sample type RNA
 
Source name GV oocyte from old mice (66 weeks)
Organism Mus musculus
Characteristics fully-grown GV oocyte from 66 weeks old mice.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label biotin
Label protocol total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
 
Hybridization protocol cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
Scan protocol standard Affymetrix procedures
Description Gene expression of GV oocyte from 66 weeks old B6D2 mice
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 03, 2008
Last update date Aug 28, 2018
Contact name Hua Pan
E-mail(s) [email protected]
Organization name University of Pennsylvania
Department Department of Biology
Street address 415 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1261
Series (1)
GSE11667 Age-associated increase in aneuploidy and changes in gene expression in mouse eggs.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL absence/presence
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 74.2499 P 0.00141043
AFFX-BioB-M_at 116.265 P 0.000581214
AFFX-BioB-3_at 60.8477 P 0.0044838
AFFX-BioC-5_at 224.025 P 8.14279e-05
AFFX-BioC-3_at 251.344 P 4.42873e-05
AFFX-BioDn-5_at 486.624 P 4.42873e-05
AFFX-BioDn-3_at 1025.62 P 0.000509415
AFFX-CreX-5_at 2654.79 P 5.16732e-05
AFFX-CreX-3_at 3754.72 P 4.42873e-05
AFFX-DapX-5_at 10.2158 A 0.250777
AFFX-DapX-M_at 10.4399 A 0.382599
AFFX-DapX-3_at 5.97128 A 0.699394
AFFX-LysX-5_at 1.16268 A 0.834139
AFFX-LysX-M_at 1.89832 A 0.957038
AFFX-LysX-3_at 1.63524 A 0.313723
AFFX-PheX-5_at 0.487317 A 0.953518
AFFX-PheX-M_at 0.66925 A 0.945787
AFFX-PheX-3_at 5.26944 A 0.52976
AFFX-ThrX-5_at 2.84843 A 0.932322
AFFX-ThrX-M_at 2.47799 A 0.686277

Total number of rows: 45101

Table truncated, full table size 1363 Kbytes.




Supplementary file Size Download File type/resource
GSM296394.cel.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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