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Sample GSM2928231 Query DataSets for GSM2928231
Status Public on Jan 11, 2018
Title CE62
Sample type RNA
 
Source name primary desmoid tumor
Organism Homo sapiens
Characteristics ctnnb1 mutational status: T41A
tissue: primary desmoid tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN FFPE RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol RNA from each sample was labeled according to the manufacturers recommendations (Illumina WG-DASL Expression Profiling Assay Guide).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 9389333008_E
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software v3.8
 
Submission date Jan 10, 2018
Last update date Jan 11, 2018
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE109023 Beta-catenin in Desmoid Tumors: the role of T41A and S45F mutations on gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 62.82683 0.5172414
ILMN_2055271 1866.982 0
ILMN_2383229 42.32594 0.8448276
ILMN_1806310 835.0007 0.003448276
ILMN_1779670 53.49865 0.6103448
ILMN_1717783 40.41339 0.8758621
ILMN_1814316 7472.117 0
ILMN_2359168 7496.618 0
ILMN_1731507 35.6143 0.962069
ILMN_1787689 71.16263 0.437931
ILMN_3241953 44.33376 0.7965517
ILMN_1745607 2642.846 0
ILMN_2136495 683.1382 0.006896552
ILMN_1668111 53.82537 0.6068966
ILMN_2295559 50.54316 0.6482759
ILMN_1735045 1076.447 0.003448276
ILMN_1680754 658.9186 0.01034483
ILMN_2375184 40.43174 0.8758621
ILMN_1659452 162.7402 0.1931034
ILMN_1767388 513.8225 0.02068966

Total number of rows: 29377

Table truncated, full table size 880 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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