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Sample GSM2928226 Query DataSets for GSM2928226
Status Public on Jan 11, 2018
Title CE57
Sample type RNA
 
Source name primary desmoid tumor
Organism Homo sapiens
Characteristics ctnnb1 mutational status: WT
tissue: primary desmoid tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN FFPE RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol RNA from each sample was labeled according to the manufacturers recommendations (Illumina WG-DASL Expression Profiling Assay Guide).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 9389333006_L
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software v3.8
 
Submission date Jan 10, 2018
Last update date Jan 11, 2018
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE109023 Beta-catenin in Desmoid Tumors: the role of T41A and S45F mutations on gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 52.32384 0.3413793
ILMN_2055271 441.1232 0
ILMN_2383229 41.0633 0.737931
ILMN_1806310 48.72675 0.437931
ILMN_1779670 43.99251 0.6275862
ILMN_1717783 47.3831 0.5103448
ILMN_1814316 1965.443 0
ILMN_2359168 2180.802 0
ILMN_1731507 255.4026 0.003448276
ILMN_1787689 57.66814 0.2310345
ILMN_3241953 147.934 0.006896552
ILMN_1745607 13463.59 0
ILMN_2136495 83.51865 0.04137931
ILMN_1668111 47.31065 0.5103448
ILMN_2295559 55.54562 0.2655172
ILMN_1735045 3385.965 0
ILMN_1680754 90.43152 0.03448276
ILMN_2375184 55.17144 0.2724138
ILMN_1659452 71.10616 0.1034483
ILMN_1767388 84.53324 0.03793104

Total number of rows: 29377

Table truncated, full table size 811 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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