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Sample GSM2928224 Query DataSets for GSM2928224
Status Public on Jan 11, 2018
Title CE55
Sample type RNA
 
Source name primary desmoid tumor
Organism Homo sapiens
Characteristics ctnnb1 mutational status: T41A
tissue: primary desmoid tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN FFPE RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol RNA from each sample was labeled according to the manufacturers recommendations (Illumina WG-DASL Expression Profiling Assay Guide).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 9389333006_J
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software v3.8
 
Submission date Jan 10, 2018
Last update date Jan 11, 2018
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE109023 Beta-catenin in Desmoid Tumors: the role of T41A and S45F mutations on gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 51.61718 0.5034482
ILMN_2055271 503.6243 0
ILMN_2383229 53.69565 0.4482759
ILMN_1806310 73.34865 0.1448276
ILMN_1779670 48.09472 0.6
ILMN_1717783 55.08821 0.4068966
ILMN_1814316 373.1361 0
ILMN_2359168 374.8619 0
ILMN_1731507 31.79439 0.9965518
ILMN_1787689 70.38033 0.162069
ILMN_3241953 152.7851 0.01034483
ILMN_1745607 4471.856 0
ILMN_2136495 93.60545 0.04137931
ILMN_1668111 52.05501 0.4931034
ILMN_2295559 40.482 0.8137931
ILMN_1735045 1444.895 0
ILMN_1680754 99.21209 0.03103448
ILMN_2375184 55.92357 0.3862069
ILMN_1659452 80.6465 0.08965518
ILMN_1767388 69.19086 0.1793104

Total number of rows: 29377

Table truncated, full table size 810 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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