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Sample GSM2891149 Query DataSets for GSM2891149
Status Public on Jul 22, 2018
Title Patient18_Tumor25_Specimen37
Sample type genomic
 
Source name Ovarian teratoma
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian teratoma
devlopment stage: adult
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from MCT tissues using the Qiagen DNA Mini Kit.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol DNA was amplified, fragmented and hybridized to each BeadChip arrays according to the manufacturer's instructions.
Scan protocol The BeadChip array was scanned using the iScan (Illumina)
Data processing Data were processed using GenomeStudio V2011.1
 
Submission date Dec 15, 2017
Last update date Jul 22, 2018
Contact name Hirokazu Usui
E-mail(s) [email protected]
Phone 81-43-222-2121
Organization name Graduate School of Medicine, Chiba University
Department Department of Reproductive Medicine
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platform ID GPL13829
Series (1)
GSE85424 Definitive classification of ovarian mature cystic teratomas origin using B allele frequency plots with SNP array analysis

Data table header descriptions
ID_REF
GC Score
Allele1 - AB
Allele2 - AB
Theta
R
B Allele Freq
VALUE Log 2 Ratio

Data table
ID_REF GC Score Allele1 - AB Allele2 - AB Theta R B Allele Freq VALUE
cnvi0111185 0.0000 - - 0.980 1.361 1.0000 0.0878
cnvi0111186 0.0000 - - 0.016 0.474 0.0000 -0.1241
cnvi0111187 0.0000 - - 0.975 1.613 0.9897 0.1063
cnvi0111188 0.0000 - - 0.013 1.257 0.0006 -0.0726
cnvi0111189 0.0000 - - 0.027 1.344 0.0045 -0.1342
cnvi0111190 0.0000 - - 0.013 0.362 0.0000 -0.2804
cnvi0111191 0.0000 - - 0.050 0.379 0.0141 -1.2661
cnvi0111192 0.0000 - - 0.030 0.911 0.0093 -0.3307
cnvi0111193 0.0000 - - 0.016 1.091 0.0047 -0.0837
cnvi0111194 0.0000 - - 0.986 1.247 0.9993 -0.0097
cnvi0111195 0.0000 - - 0.035 2.195 0.0053 0.0349
cnvi0111196 0.0000 - - 0.987 1.189 1.0000 -0.0559
cnvi0111197 0.0000 - - 0.008 0.795 0.0000 -0.1029
cnvi0111198 0.0000 - - 0.973 1.421 1.0000 0.0796
cnvi0111199 0.0000 - - 0.013 1.182 0.0022 -0.2203
cnvi0111200 0.0000 - - 0.981 0.755 0.9937 -0.1488
cnvi0111201 0.0000 - - 0.024 0.930 0.0000 0.0874
cnvi0111202 0.0000 - - 0.949 1.219 1.0000 -0.1394
cnvi0111203 0.0000 - - 0.074 1.985 0.0347 0.1035
cnvi0111204 0.0000 - - 0.990 1.216 1.0000 0.0820

Total number of rows: 298563

Table truncated, full table size 13901 Kbytes.




Supplementary file Size Download File type/resource
GSM2891149_Specimen37_Raw.txt.gz 3.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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