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Sample GSM2866 Query DataSets for GSM2866
Status Public on Dec 06, 2002
Title H9LMS99090508
Sample type RNA
 
Source name prostate
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Prostate
Source: University of Virginia, see PMID 11507037
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 139.08 Stdv: 10.57 Min: 122.14 Max: 169.09
 
Submission date Nov 22, 2002
Last update date Mar 20, 2006
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 8 3 16 16 16 0.50 2.69 0 0 2.67 189.74 A
1001_at 6 1 16 16 14 0.38 1.28 0 0 6.00 70.35 P
1002_f_at 4 2 16 16 14 0.25 0.39 0 0 2.00 62.06 A
1003_s_at 6 4 16 16 14 0.38 0.36 0 0 1.50 60.95 A
1004_at 8 4 16 16 15 0.50 0.60 0 0 2.00 -53.98 A
1005_at 13 0 16 16 16 0.81 5.32 0 0 Undef 2021.40 P
1006_at 4 5 16 16 15 0.25 -0.87 0 0 0.80 -62.76 A
1007_s_at 12 1 16 16 15 0.75 4.18 0 0 12.00 1010.75 P
1008_f_at 10 1 16 16 15 0.62 2.59 0 0 10.00 936.65 P
1009_at 12 0 16 16 15 0.75 4.88 0 0 Undef 1364.26 P
100_g_at 2 3 16 16 14 0.12 0.14 1 0 0.67 179.73 A
1010_at 3 5 16 16 13 0.19 -0.72 0 0 0.60 -29.68 A
1011_s_at 10 1 16 16 14 0.62 3.37 0 0 10.00 160.47 P
1012_at 5 4 16 16 15 0.31 0.30 0 0 1.25 16.99 A
1013_at 11 1 16 16 15 0.69 2.86 0 0 11.00 120.35 P
1014_at 7 2 16 16 14 0.44 1.21 0 0 3.50 -22.79 M
1015_s_at 4 4 16 16 14 0.25 0.84 0 0 1.00 -112.54 A
1016_s_at 8 2 16 16 15 0.50 1.01 0 0 4.00 27.80 P
1017_at 8 1 16 16 15 0.50 2.82 0 0 8.00 64.68 P
1018_at 1 5 16 16 15 0.06 -0.96 0 0 0.20 -227.86 A

Total number of rows: 12600

Table truncated, full table size 623 Kbytes.




Supplementary file Size Download File type/resource
GSM2866.CEL.gz 3.0 Mb (ftp)(http) CEL

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