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Sample GSM26943 Query DataSets for GSM26943
Status Public on Jul 15, 2005
Title K14deltaNB-cateninER Time 7 replicate 2
Sample type RNA
 
Source name Total skin
Organism Mus musculus
Extracted molecule total RNA
 
Description Total RNA was isolated from D2 K14deltaNB-cateninER transgenic mice treated for 7 days with 4-hydroxytamoxifen (4OHT; Sigma) using Trizol reagent (Gibco BRL). Double stranded cDNA was generated from 10 ug total RNA and used to generate biotinylated cRNA using the Enzo BioArray High Yield Transcription Labelling Kit (Affymetrix). The cRNA was fragmented using the GeneChip Sample Cleanup Module (Affymetrix) and 10 ug were hybridized to GeneChip Mouse Expression Set 430 A oligonucleotide arrays (Affymetrix). Hybridizations were performed according to the manufacturers instructions using an Affymetrix Gene Chip Instrument System. The arrays were scanned on an Affymetrix GeneChip scanner.
Keywords = Mouse
Keywords = Affymetrix
Keywords = Skin
Keywords = Hair
Keywords = Epidermis
Keywords = Keratinocyte
Keywords = B-catenin
Keywords = Stem Cell
 
Submission date Jul 15, 2004
Last update date May 28, 2005
Contact name Fiona M Watt
E-mail(s) [email protected]
Phone 020 7242 0200 3527
Organization name Cancer Research UK
Department Keratinocyte
Lab Fiona Watt Lab
Street address 44 Lincolns Inn Fields
City London
ZIP/Postal code E3 5NZ
Country United Kingdom
 
Platform ID GPL339
Series (1)
GSE1579 Conditional activation of B-catenin in adult mouse epidermis for 0, 1, or 7 days

Data table header descriptions
ID_REF
VALUE MAS 5 intensity signal
ABS_CALL an absolute call indicating if a transcript is detected (P, present), undetected (A, absent) or at the limits of detection (M, marginal)
DETECTION P-VALUE The p-value provides an indication as to the significanse of the ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 128 P 0.003595
AFFX-BioB-M_at 252.1 P 0.00034
AFFX-BioB-3_at 73.6 P 0.006187
AFFX-BioC-5_at 336 P 0.000127
AFFX-BioC-3_at 234.8 P 0.000169
AFFX-BioDn-5_at 331.1 P 0.000052
AFFX-BioDn-3_at 2076.8 P 0.000225
AFFX-CreX-5_at 3225.6 P 0.000044
AFFX-CreX-3_at 5415.8 P 0.000044
AFFX-DapX-5_at 25.1 P 0.039661
AFFX-DapX-M_at 18.9 A 0.156732
AFFX-DapX-3_at 1.8 A 0.891021
AFFX-LysX-5_at 1.5 A 0.724854
AFFX-LysX-M_at 3.6 A 0.559354
AFFX-LysX-3_at 20.2 P 0.030965
AFFX-PheX-5_at 1.7 A 0.9273
AFFX-PheX-M_at 1.7 A 0.760937
AFFX-PheX-3_at 7.3 A 0.58862
AFFX-ThrX-5_at 21.9 A 0.340661
AFFX-ThrX-M_at 14.1 A 0.185131

Total number of rows: 22690

Table truncated, full table size 619 Kbytes.




Supplementary data files not provided

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