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Sample GSM26935 Query DataSets for GSM26935
Status Public on Jul 15, 2005
Title K14deltaNB-cateninER Time 0 replicate 1
Sample type RNA
 
Source name Total skin
Organism Mus musculus
Extracted molecule total RNA
 
Description Total RNA was isolated from D2 K14deltaNB-cateninER transgenic mice treated for 0 days with 4-hydroxytamoxifen (4OHT; Sigma) using Trizol reagent (Gibco BRL). Double stranded cDNA was generated from 10 ug total RNA and used to generate biotinylated cRNA using the Enzo BioArray High Yield Transcription Labelling Kit (Affymetrix). The cRNA was fragmented using the GeneChip Sample Cleanup Module (Affymetrix) and 10 ug were hybridized to GeneChip Mouse Expression Set 430 A oligonucleotide arrays (Affymetrix). Hybridizations were performed according to the manufacturers instructions using an Affymetrix Gene Chip Instrument System. The arrays were scanned on an Affymetrix GeneChip scanner.
Keywords = Mouse
Keywords = Affymetrix
Keywords = Skin
Keywords = Hair
Keywords = Epidermis
Keywords = Keratinocyte
Keywords = B-catenin
Keywords = Stem Cell
 
Submission date Jul 15, 2004
Last update date May 28, 2005
Contact name Fiona M Watt
E-mail(s) [email protected]
Phone 020 7242 0200 3527
Organization name Cancer Research UK
Department Keratinocyte
Lab Fiona Watt Lab
Street address 44 Lincolns Inn Fields
City London
ZIP/Postal code E3 5NZ
Country United Kingdom
 
Platform ID GPL339
Series (1)
GSE1579 Conditional activation of B-catenin in adult mouse epidermis for 0, 1, or 7 days

Data table header descriptions
ID_REF
VALUE MAS 5 intensity signal
ABS_CALL an absolute call indicating if a transcript is detected (P, present), undetected (A, absent) or at the limits of detection (M, marginal)
DETECTION P-VALUE The p-value provides an indication as to the significance of the ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 124.4 P 0.004484
AFFX-BioB-M_at 226.4 P 0.000857
AFFX-BioB-3_at 86.9 P 0.000857
AFFX-BioC-5_at 385.1 P 0.00011
AFFX-BioC-3_at 269.9 P 0.00007
AFFX-BioDn-5_at 310.3 P 0.000044
AFFX-BioDn-3_at 2362.9 P 0.000127
AFFX-CreX-5_at 3588.3 P 0.000044
AFFX-CreX-3_at 6320.3 P 0.000044
AFFX-DapX-5_at 17.5 A 0.41138
AFFX-DapX-M_at 13.2 A 0.327079
AFFX-DapX-3_at 3.3 A 0.749204
AFFX-LysX-5_at 3.5 A 0.672949
AFFX-LysX-M_at 3.2 A 0.631562
AFFX-LysX-3_at 30.4 P 0.011384
AFFX-PheX-5_at 2 A 0.960339
AFFX-PheX-M_at 1.2 A 0.910522
AFFX-PheX-3_at 5.7 A 0.814869
AFFX-ThrX-5_at 11.5 A 0.48511
AFFX-ThrX-M_at 8 A 0.617401

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary data files not provided

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