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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 14, 2004 |
| Title |
TX7BX |
| Sample type |
RNA |
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|
| Source name |
kidney
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| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
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| Description |
Clinical status: sample from well-functioning transplant with no clinical evidence of rejection
Age: 46
Sex: Female
Immunosupression: CsA/MMF/P
Histopathology: Normal
Donor type: CAD
Scr (mg/dL): 1.2
Days post transplant: 713
Abbreviations used in sample description: Abreviations used to describe patient samples include the following: BX - Biopsy; PBL- Peripheral Blood Lymphocytes; CsA -Cyclosporine; MMF - Mycophenolate Mofetil; P - Prednisone; FK - Tacrolimus; SRL - Sirolimus; CAD -Cadaveric; LD - Live Donor; Scr - Serum Creatinine; ATN - Acute Tubular Necrosis CNI - Calcineurin Inhibitor; FSGS - Focal Segmental Glomerulosclerosis
Keywords = DNA microarrays, gene expression, kidney, rejection, transplant
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| Submission date |
Jul 14, 2004 |
| Last update date |
Mar 16, 2009 |
| Contact name |
Steven Head |
| E-mail(s) |
[email protected]
|
| Phone |
858 784-2263
|
| Organization name |
The Scripps Research Institute
|
| Street address |
10550 N Torrey Pines Rd
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL8300 |
| Series (1) |
| GSE1563 |
Kidney Transplant Rejection and Tissue Injury by Gene Profiling of Biopsies and Peripheral Blood Lymphocytes |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
estimate of relative transcript abundance using dChip PM only model. |
| ABS_CALL |
the call in an MAS 5.0 absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M) |
| DETECTION P-VALUE |
'detection p-value', MAS 5.0 p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
109.4 |
A |
0.60308 |
| AFFX-MurIL10_at |
89.9 |
A |
0.48511 |
| AFFX-MurIL4_at |
62.5 |
A |
0.78348 |
| AFFX-MurFAS_at |
51.7 |
A |
0.32708 |
| AFFX-BioB-5_at |
604.3 |
P |
0.00934 |
| AFFX-BioB-M_at |
545.1 |
P |
0.00051 |
| AFFX-BioB-3_at |
752.7 |
P |
0.00256 |
| AFFX-BioC-5_at |
1209.3 |
P |
0.00023 |
| AFFX-BioC-3_at |
1015.2 |
P |
0.00015 |
| AFFX-BioDn-5_at |
1091.8 |
P |
0.00015 |
| AFFX-BioDn-3_at |
4708.9 |
P |
0.00006 |
| AFFX-CreX-5_at |
6525.0 |
P |
0.00004 |
| AFFX-CreX-3_at |
8730.0 |
P |
0.00004 |
| AFFX-BioB-5_st |
105.3 |
A |
0.32708 |
| AFFX-BioB-M_st |
141.8 |
A |
0.61740 |
| AFFX-BioB-3_st |
223.8 |
A |
0.88389 |
| AFFX-BioC-5_st |
183.0 |
A |
0.90433 |
| AFFX-BioC-3_st |
112.9 |
A |
0.86864 |
| AFFX-BioDn-5_st |
484.3 |
A |
0.22764 |
| AFFX-BioDn-3_st |
399.8 |
A |
0.08948 |
Total number of rows: 12625
Table truncated, full table size 309 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM26859.CEL.gz |
3.0 Mb |
(ftp)(http) |
CEL |
| GSM26859.EXP.gz |
497 b |
(ftp)(http) |
EXP |
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