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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 14, 2004 |
| Title |
AR5BX |
| Sample type |
RNA |
| |
|
| Source name |
kidney
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| Description |
Clinical status: sample from transplant patient with kidney undergoing acute rejection
Age: 26
Sex: Female
Immunosupression: CsA/MMF/P
Histopathology: Banff borderline
Donor type: CAD
Scr (mg/dL): 2.0
Days post transplant: 278
Abbreviations used in sample description: Abreviations used to describe patient samples include the following: BX - Biopsy; PBL- Peripheral Blood Lymphocytes; CsA -Cyclosporine; MMF - Mycophenolate Mofetil; P - Prednisone; FK - Tacrolimus; SRL - Sirolimus; CAD -Cadaveric; LD - Live Donor; Scr - Serum Creatinine; ATN - Acute Tubular Necrosis CNI - Calcineurin Inhibitor; FSGS - Focal Segmental Glomerulosclerosis
Keywords = DNA microarrays, gene expression, kidney, rejection, transplant
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| |
|
| Submission date |
Jul 14, 2004 |
| Last update date |
Mar 16, 2009 |
| Contact name |
Steven Head |
| E-mail(s) |
[email protected]
|
| Phone |
858 784-2263
|
| Organization name |
The Scripps Research Institute
|
| Street address |
10550 N Torrey Pines Rd
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL8300 |
| Series (1) |
| GSE1563 |
Kidney Transplant Rejection and Tissue Injury by Gene Profiling of Biopsies and Peripheral Blood Lymphocytes |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
estimate of relative transcript abundance using dChip PM only model. |
| ABS_CALL |
the call in an MAS 5.0 absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M) |
| DETECTION P-VALUE |
'detection p-value', MAS 5.0 p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
160.9 |
A |
0.54459 |
| AFFX-MurIL10_at |
101.7 |
A |
0.64555 |
| AFFX-MurIL4_at |
71.8 |
A |
0.89784 |
| AFFX-MurFAS_at |
45.0 |
A |
0.73717 |
| AFFX-BioB-5_at |
486.2 |
P |
0.01032 |
| AFFX-BioB-M_at |
477.2 |
P |
0.00075 |
| AFFX-BioB-3_at |
647.3 |
P |
0.00066 |
| AFFX-BioC-5_at |
1255.1 |
P |
0.00017 |
| AFFX-BioC-3_at |
1214.3 |
P |
0.00004 |
| AFFX-BioDn-5_at |
894.3 |
P |
0.00008 |
| AFFX-BioDn-3_at |
5058.2 |
P |
0.00007 |
| AFFX-CreX-5_at |
5414.1 |
P |
0.00004 |
| AFFX-CreX-3_at |
7188.2 |
P |
0.00004 |
| AFFX-BioB-5_st |
103.6 |
A |
0.27515 |
| AFFX-BioB-M_st |
191.6 |
A |
0.85206 |
| AFFX-BioB-3_st |
199.1 |
A |
0.92730 |
| AFFX-BioC-5_st |
177.7 |
A |
0.69939 |
| AFFX-BioC-3_st |
132.4 |
A |
0.83414 |
| AFFX-BioDn-5_st |
407.8 |
A |
0.21652 |
| AFFX-BioDn-3_st |
424.7 |
P |
0.03966 |
Total number of rows: 12625
Table truncated, full table size 309 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM26849.CEL.gz |
2.8 Mb |
(ftp)(http) |
CEL |
| GSM26849.EXP.gz |
330 b |
(ftp)(http) |
EXP |
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