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Sample GSM265977

Query DataSets for GSM265977

Status

Public on Dec 31, 2008

Title

Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor (TRAMP-6)

Sample type

RNA

Source name

Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor

Organism

Mus musculus

Characteristics

TRAMP Tumors

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

biotin

Label protocol

Affymetrix standard protocol.

Hybridization protocol

As described by Affymetrix. Standard protocol.

Scan protocol

Arrays were scanned with the GeneChip Scanner 3000 and GeneChip Operating Software acquired raw fluorescence data.

Description

TRAMP Tumors

Data processing

The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

Submission date

Feb 14, 2008

Last update date

Aug 28, 2018

Contact name

BIDMC GENOMICS

E-mail(s)

[email protected]

Phone

6176670884

Organization name

Beth Israel Deaconess Medical Center

Department

Genomics Center

Street address

4 BlackFan Circle

City

Boston

State/province

ZIP/Postal code

02115

Country

USA

Platform ID

GPL1261

Series (1)

GSE10525

Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP)

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1350.964	P	0.00010954
AFFX-BioB-M_at	1974.014	P	4.42873E-05
AFFX-BioB-3_at	1010.124	P	4.42873E-05
AFFX-BioC-5_at	3835.02	P	4.42873E-05
AFFX-BioC-3_at	4200.33	P	4.42873E-05
AFFX-BioDn-5_at	6455.458	P	4.42873E-05
AFFX-BioDn-3_at	16405.22	P	5.16733E-05
AFFX-CreX-5_at	51762.09	P	4.42873E-05
AFFX-CreX-3_at	54807.18	P	4.42873E-05
AFFX-DapX-5_at	89.36923	P	0.03966084
AFFX-DapX-M_at	70.74931	A	0.1479177
AFFX-DapX-3_at	44.86395	A	0.8432896
AFFX-LysX-5_at	3.520572	A	0.8246928
AFFX-LysX-M_at	9.182725	A	0.6315734
AFFX-LysX-3_at	65.8792	A	0.07269989
AFFX-PheX-5_at	6.162889	A	0.9906626
AFFX-PheX-M_at	6.855084	A	0.6993936
AFFX-PheX-3_at	21.06145	A	0.6315844
AFFX-ThrX-5_at	22.68431	A	0.4259623
AFFX-ThrX-M_at	44.13747	A	0.3544527

Total number of rows: 45101

Table truncated, full table size 1420 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM265977.CEL.gz	3.4 Mb	(ftp)(http)	CEL
Processed data included within Sample table