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Sample GSM265020 Query DataSets for GSM265020
Status Public on Feb 14, 2008
Title rheumatoid arthritis 9252
Sample type RNA
 
Source name RA patient
Organism Homo sapiens
Characteristics Synovial fluid macrophages
Biomaterial provider HSS
Treatment protocol no treatment
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label biotin
Label protocol Labeled cDNA was prepared with BioArray High Yield RNA Transcription Kit (Enzo Life Sciences, Farmingdale,NY)
 
Hybridization protocol hybridized to Affymetrix HG U95 Av2 GeneChip using Affymetrix fluidics station according to the instructions of the manufacturer
Scan protocol Affymetrix Gene-Array Scanner
Description Synovial fluid macrophages from individual RA donor
Data processing Affymetrix Microarray Suite MAS 5.0. Images were scaled to an average hybridization intensity of 250. Further data analysis was performed using GeneSpring software.
 
Submission date Feb 11, 2008
Last update date Mar 16, 2009
Contact name Taras Antoniv
Organization name Hospital for Special Surgery
Department Research
Lab Lionel B. Ivashkiv, MD
Street address 535 East 70th Street
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL8300
Series (1)
GSE10500 Gene expression in rheumatoid arthritis synovial macrophages

Data table header descriptions
ID_REF
VALUE normalized value
ABS_CALL detection call
DETECTION P-VALUE detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 12.7697 A 0.631562
AFFX-MurIL10_at 16.9833 A 0.440646
AFFX-MurIL4_at 19.9192 A 0.116113
AFFX-MurFAS_at 24.4158 A 0.18511
AFFX-BioB-5_at 437.341 P 0.000224668
AFFX-BioB-M_at 1121.65 P 4.42873e-05
AFFX-BioB-3_at 584.099 P 5.16732e-05
AFFX-BioC-5_at 1214.3 P 5.16732e-05
AFFX-BioC-3_at 1101.27 P 4.42873e-05
AFFX-BioDn-5_at 1451.06 P 4.42873e-05
AFFX-BioDn-3_at 5586.2 P 4.42873e-05
AFFX-CreX-5_at 15610.7 P 4.42873e-05
AFFX-CreX-3_at 19742.2 P 4.42873e-05
AFFX-BioB-5_st 27.5234 A 0.287726
AFFX-BioB-M_st 46.3526 A 0.39692
AFFX-BioB-3_st 14.4102 A 0.631562
AFFX-BioC-5_st 5.90052 A 0.794268
AFFX-BioC-3_st 6.50138 A 0.559354
AFFX-BioDn-5_st 28.1169 A 0.175328
AFFX-BioDn-3_st 83.6659 P 0.0103167

Total number of rows: 12625

Table truncated, full table size 358 Kbytes.




Supplementary file Size Download File type/resource
GSM265020.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM265020.CHP.gz 4.4 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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