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Sample GSM2593158 Query DataSets for GSM2593158
Status Public on May 01, 2017
Title case9_T6_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 9
gender: Female
age: 74
primary tumor differentiation: moderately differentiated
tumor or normal colon location: ascending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 74
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7147869
rs3094315-131_B_F_1857408493 0 -0.1164345
rs3131972-131_T_R_1857421833 0.9931711 -0.05117135
rs12562034-131_B_R_1858595326 0.5039093 0.3323771
rs12124819-131_B_R_1857380364 0 1.041989
rs11240777-131_T_F_1857259998 0.5287586 -0.06970752
rs6681049-131_T_R_1858018399 0.9964085 -0.03485646
rs4970383-131_T_R_1857736617 1 0.02201724
rs4475691-131_T_R_1857599365 0.9983224 -0.1252479
rs7537756-131_T_F_1857298910 0.01537093 -0.05975488
rs2272756-131_B_F_1857180676 0.9969009 0.04197358
rs17160698-131_T_R_1856941558 0.03884668 0.01118698
rs3748597-131_T_R_1853475664 0.9973869 0.01269785
rs13303106-131_T_F_1857538098 0.9550502 -0.158984
rs28415373-131_T_R_1857337676 1 -0.1733789
rs28391282-131_T_F_1857337024 0.9792066 -0.1249366
rs13303118-131_B_F_1857538100 0.01152067 -0.1115342
rs2341354-131_T_F_1858039701 0.9866152 -0.03999595
rs6665000-131_T_F_1857014860 0.02886374 -0.1729547
rs2341362-131_B_R_1857209587 1 0.2516299

Total number of rows: 600129

Table truncated, full table size 28045 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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