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Sample GSM2593156 Query DataSets for GSM2593156
Status Public on May 01, 2017
Title case9_T2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 9
gender: Female
age: 74
primary tumor differentiation: moderately differentiated
tumor or normal colon location: ascending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 72
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6810011
rs3094315-131_B_F_1857408493 0.01085512 -0.08286715
rs3131972-131_T_R_1857421833 1 0.1230891
rs12562034-131_B_R_1858595326 0.5612838 0.3974062
rs12124819-131_B_R_1857380364 0 0.9378257
rs11240777-131_T_F_1857259998 0.5235671 -0.1045714
rs6681049-131_T_R_1858018399 1 -0.09021795
rs4970383-131_T_R_1857736617 1 -0.00463972
rs4475691-131_T_R_1857599365 0.999755 -0.01626093
rs7537756-131_T_F_1857298910 0.004994589 -0.02745083
rs2272756-131_B_F_1857180676 1 0.1138968
rs17160698-131_T_R_1856941558 0.01043297 -0.2025265
rs3748597-131_T_R_1853475664 1 -0.0128787
rs13303106-131_T_F_1857538098 0.9334393 0.006212035
rs28415373-131_T_R_1857337676 0.9796904 0.05073763
rs28391282-131_T_F_1857337024 0.9705113 -0.09354763
rs13303118-131_B_F_1857538100 0.008869163 -0.1757436
rs2341354-131_T_F_1858039701 0.991187 -0.113793
rs6665000-131_T_F_1857014860 0.01684711 -0.1500823
rs2341362-131_B_R_1857209587 0.9958191 0.2507145

Total number of rows: 600129

Table truncated, full table size 28008 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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