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Sample GSM2593150 Query DataSets for GSM2593150
Status Public on May 01, 2017
Title case8_T4_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 8
gender: Female
age: 76
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 66
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7107899
rs3094315-131_B_F_1857408493 0.02987051 -0.21187
rs3131972-131_T_R_1857421833 1 -0.09058187
rs12562034-131_B_R_1858595326 0.0282686 0.4290124
rs12124819-131_B_R_1857380364 0 1.071415
rs11240777-131_T_F_1857259998 0.9887329 -0.0271187
rs6681049-131_T_R_1858018399 1 0.01928649
rs4970383-131_T_R_1857736617 0.4362741 -0.1727286
rs4475691-131_T_R_1857599365 1 -0.3038082
rs7537756-131_T_F_1857298910 0.03474681 -0.2145362
rs2272756-131_B_F_1857180676 0.9976544 0.000140503
rs17160698-131_T_R_1856941558 0.02832022 -0.2168673
rs3748597-131_T_R_1853475664 0.997977 -0.07813809
rs13303106-131_T_F_1857538098 0.9701124 -0.1853156
rs28415373-131_T_R_1857337676 0.9741285 -0.1710416
rs28391282-131_T_F_1857337024 0.9964188 -0.1584253
rs13303118-131_B_F_1857538100 0 -0.1886209
rs2341354-131_T_F_1858039701 0.9993389 -0.1273959
rs6665000-131_T_F_1857014860 0.01418362 -0.2396016
rs2341362-131_B_R_1857209587 0.9987451 0.1396667

Total number of rows: 600129

Table truncated, full table size 28095 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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