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Sample GSM2593146 Query DataSets for GSM2593146
Status Public on May 01, 2017
Title case7_T8_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 7
gender: Female
age: 49
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 62
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.585852
rs3094315-131_B_F_1857408493 0 -0.2392861
rs3131972-131_T_R_1857421833 0.9908322 -0.1229832
rs12562034-131_B_R_1858595326 0 0.5168837
rs12124819-131_B_R_1857380364 0 0.921698
rs11240777-131_T_F_1857259998 0.988355 0.01489548
rs6681049-131_T_R_1858018399 1 -0.02607382
rs4970383-131_T_R_1857736617 0.01444004 -0.3479199
rs4475691-131_T_R_1857599365 1 -0.1783272
rs7537756-131_T_F_1857298910 0.02881058 -0.163424
rs2272756-131_B_F_1857180676 1 0.06329566
rs17160698-131_T_R_1856941558 0 -0.1699466
rs3748597-131_T_R_1853475664 0.9998979 -0.05420122
rs13303106-131_T_F_1857538098 1 -0.182678
rs28415373-131_T_R_1857337676 1 -0.134097
rs28391282-131_T_F_1857337024 0.9983439 -0.2146782
rs13303118-131_B_F_1857538100 0.004905225 -0.1823294
rs2341354-131_T_F_1858039701 0.9967653 -0.08996413
rs6665000-131_T_F_1857014860 0.001015048 -0.300936
rs2341362-131_B_R_1857209587 1 0.2461123

Total number of rows: 600129

Table truncated, full table size 27794 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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