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Sample GSM2593143 Query DataSets for GSM2593143
Status Public on May 01, 2017
Title case7_T4_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 7
gender: Female
age: 49
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 59
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6045892
rs3094315-131_B_F_1857408493 0.008931886 -0.07995914
rs3131972-131_T_R_1857421833 1 -0.01703975
rs12562034-131_B_R_1858595326 0 0.5892486
rs12124819-131_B_R_1857380364 0 0.7399355
rs11240777-131_T_F_1857259998 0.9745387 0.03667888
rs6681049-131_T_R_1858018399 0.9995908 -0.06436201
rs4970383-131_T_R_1857736617 0.0498789 -0.2813785
rs4475691-131_T_R_1857599365 0.9599603 -0.06811903
rs7537756-131_T_F_1857298910 0.02205357 -0.2284749
rs2272756-131_B_F_1857180676 1 0.08977325
rs17160698-131_T_R_1856941558 0.02753769 -0.1317247
rs3748597-131_T_R_1853475664 0.9826493 -0.1169961
rs13303106-131_T_F_1857538098 0.9588718 -0.1278039
rs28415373-131_T_R_1857337676 0.9999468 -0.1049454
rs28391282-131_T_F_1857337024 1 -0.09748641
rs13303118-131_B_F_1857538100 0.002713138 -0.1034534
rs2341354-131_T_F_1858039701 1 -0.07827717
rs6665000-131_T_F_1857014860 0 -0.0768168
rs2341362-131_B_R_1857209587 1 0.1721997

Total number of rows: 600129

Table truncated, full table size 27908 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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