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Sample GSM2593142 Query DataSets for GSM2593142
Status Public on May 01, 2017
Title case7_T2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 7
gender: Female
age: 49
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 58
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.8468446
rs3094315-131_B_F_1857408493 0.007448849 -0.1576087
rs3131972-131_T_R_1857421833 1 -0.05415774
rs12562034-131_B_R_1858595326 0 0.7015684
rs12124819-131_B_R_1857380364 0.006152179 0.7559505
rs11240777-131_T_F_1857259998 1 -0.01183004
rs6681049-131_T_R_1858018399 0.9841705 0.03456206
rs4970383-131_T_R_1857736617 0.000599742 -0.4269097
rs4475691-131_T_R_1857599365 0.9868979 -0.1727764
rs7537756-131_T_F_1857298910 0.02680614 -0.126882
rs2272756-131_B_F_1857180676 0.9927149 0.10964
rs17160698-131_T_R_1856941558 0.01515321 -0.1251946
rs3748597-131_T_R_1853475664 0.9695312 0.05916685
rs13303106-131_T_F_1857538098 0.9829387 -0.09439421
rs28415373-131_T_R_1857337676 1 -0.05472032
rs28391282-131_T_F_1857337024 0.9856305 -0.04178972
rs13303118-131_B_F_1857538100 0 -0.03540504
rs2341354-131_T_F_1858039701 1 -0.1158258
rs6665000-131_T_F_1857014860 0.01383256 -0.1873655
rs2341362-131_B_R_1857209587 1 0.1546934

Total number of rows: 600129

Table truncated, full table size 27942 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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