NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2593136 Query DataSets for GSM2593136
Status Public on May 01, 2017
Title case6_T3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 6
gender: Female
age: 66
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 52
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.00042638 0.5560995
rs3094315-131_B_F_1857408493 0.01336532 -0.1746061
rs3131972-131_T_R_1857421833 0.9938377 -0.1349652
rs12562034-131_B_R_1858595326 1 0.1660064
rs12124819-131_B_R_1857380364 0.02656543 0.8097086
rs11240777-131_T_F_1857259998 0.9748118 -0.03846358
rs6681049-131_T_R_1858018399 1 -0.0497499
rs4970383-131_T_R_1857736617 1 -0.05416408
rs4475691-131_T_R_1857599365 1 -0.1954038
rs7537756-131_T_F_1857298910 0.05613218 -0.09155194
rs2272756-131_B_F_1857180676 0.9984335 -0.02960592
rs17160698-131_T_R_1856941558 0.01875579 -0.1425508
rs3748597-131_T_R_1853475664 1 -0.1157429
rs13303106-131_T_F_1857538098 0.9941274 -0.1621992
rs28415373-131_T_R_1857337676 0.990591 -0.1612657
rs28391282-131_T_F_1857337024 0.03527744 -0.3528436
rs13303118-131_B_F_1857538100 0 -0.1573351
rs2341354-131_T_F_1858039701 1 -0.1525396
rs6665000-131_T_F_1857014860 0.01045481 -0.2861208
rs2341362-131_B_R_1857209587 1 0.1171017

Total number of rows: 600129

Table truncated, full table size 27851 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap