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Sample GSM2593131 Query DataSets for GSM2593131
Status Public on May 01, 2017
Title case5_T6_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 47
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6027654
rs3094315-131_B_F_1857408493 0.5783995 -0.1224183
rs3131972-131_T_R_1857421833 0.5159809 -0.1074193
rs12562034-131_B_R_1858595326 1 0.1680728
rs12124819-131_B_R_1857380364 0 0.727695
rs11240777-131_T_F_1857259998 0.5074441 0.1211302
rs6681049-131_T_R_1858018399 0.975539 0.1006784
rs4970383-131_T_R_1857736617 0.5114111 -0.1419927
rs4475691-131_T_R_1857599365 0.5413497 -0.04190268
rs7537756-131_T_F_1857298910 0.4920977 -0.01267127
rs2272756-131_B_F_1857180676 1 0.1256533
rs17160698-131_T_R_1856941558 0.02203586 -0.05738841
rs3748597-131_T_R_1853475664 0.9818033 -0.05106008
rs13303106-131_T_F_1857538098 0.9511957 -0.1430242
rs28415373-131_T_R_1857337676 0.9982764 -0.04849534
rs28391282-131_T_F_1857337024 0.991576 0.01698864
rs13303118-131_B_F_1857538100 0.9852811 -0.182246
rs2341354-131_T_F_1858039701 0.522306 -0.163827
rs6665000-131_T_F_1857014860 0 -0.3685617
rs2341362-131_B_R_1857209587 1 0.07520264

Total number of rows: 600129

Table truncated, full table size 27888 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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