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Sample GSM2593126 Query DataSets for GSM2593126
Status Public on May 01, 2017
Title case5_N_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 42
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.8311489
rs3094315-131_B_F_1857408493 0.4559286 0.04955329
rs3131972-131_T_R_1857421833 0.5015544 0.0870803
rs12562034-131_B_R_1858595326 1 0.05248331
rs12124819-131_B_R_1857380364 0 0.9324279
rs11240777-131_T_F_1857259998 0.4867692 0.07251602
rs6681049-131_T_R_1858018399 0.9960194 0.001753844
rs4970383-131_T_R_1857736617 0.5926071 0.3993842
rs4475691-131_T_R_1857599365 0.4872285 -0.059613
rs7537756-131_T_F_1857298910 0.4854928 -0.04853163
rs2272756-131_B_F_1857180676 1 0.1732594
rs17160698-131_T_R_1856941558 0.02832707 -0.1886748
rs3748597-131_T_R_1853475664 1 0.04608119
rs13303106-131_T_F_1857538098 1 -0.02504545
rs28415373-131_T_R_1857337676 1 0.02009742
rs28391282-131_T_F_1857337024 0.9839795 0.07073859
rs13303118-131_B_F_1857538100 0.986069 -0.02909622
rs2341354-131_T_F_1858039701 0.5137123 -0.02927294
rs6665000-131_T_F_1857014860 0.0241996 -0.2212093
rs2341362-131_B_R_1857209587 1 0.1848336

Total number of rows: 600129

Table truncated, full table size 27908 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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