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Sample GSM2593122 Query DataSets for GSM2593122
Status Public on May 01, 2017
Title case4_T4_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 4
gender: Male
age: 61
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 38
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6411542
rs3094315-131_B_F_1857408493 0.6348831 -0.1204114
rs3131972-131_T_R_1857421833 0.3958027 -0.4797553
rs12562034-131_B_R_1858595326 1 0.1288721
rs12124819-131_B_R_1857380364 0 0.7164647
rs11240777-131_T_F_1857259998 0.4413881 0.07206684
rs6681049-131_T_R_1858018399 0.9956341 -0.1120055
rs4970383-131_T_R_1857736617 0.500672 -0.09961878
rs4475691-131_T_R_1857599365 0.4102896 -0.1955998
rs7537756-131_T_F_1857298910 0.6031107 -0.09988149
rs2272756-131_B_F_1857180676 0.4123204 0.03595891
rs17160698-131_T_R_1856941558 0.01617549 -0.2640722
rs3748597-131_T_R_1853475664 1 -0.1359989
rs13303106-131_T_F_1857538098 0.4245064 -0.06544859
rs28415373-131_T_R_1857337676 1 -0.1033444
rs28391282-131_T_F_1857337024 0.7291983 0.01349494
rs13303118-131_B_F_1857538100 0.5265132 -0.1798518
rs2341354-131_T_F_1858039701 0.4464136 -0.09955944
rs6665000-131_T_F_1857014860 0 -0.2832027
rs2341362-131_B_R_1857209587 1 0.1274958

Total number of rows: 600129

Table truncated, full table size 27759 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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