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Sample GSM2593121 Query DataSets for GSM2593121
Status Public on May 01, 2017
Title case4_T3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 4
gender: Male
age: 61
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 37
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.000262427 0.6606286
rs3094315-131_B_F_1857408493 0.5597526 0.03269653
rs3131972-131_T_R_1857421833 0.5049611 -0.0926703
rs12562034-131_B_R_1858595326 1 0.3302482
rs12124819-131_B_R_1857380364 0 0.7653998
rs11240777-131_T_F_1857259998 0.5068023 0.0243761
rs6681049-131_T_R_1858018399 0.9967605 0.06722409
rs4970383-131_T_R_1857736617 0.6106449 0.2745226
rs4475691-131_T_R_1857599365 0.5042674 -0.1916667
rs7537756-131_T_F_1857298910 0.5015905 -0.1410316
rs2272756-131_B_F_1857180676 0.5461402 0.1641626
rs17160698-131_T_R_1856941558 0.003212891 -0.0957691
rs3748597-131_T_R_1853475664 0.9995605 0.008181704
rs13303106-131_T_F_1857538098 0.4895352 -0.06990057
rs28415373-131_T_R_1857337676 1 -0.1137679
rs28391282-131_T_F_1857337024 0.5497077 -0.1282637
rs13303118-131_B_F_1857538100 0.4572333 -0.05447141
rs2341354-131_T_F_1858039701 0.5152106 -0.07180949
rs6665000-131_T_F_1857014860 0.01713806 -0.1550224
rs2341362-131_B_R_1857209587 1 0.2195396

Total number of rows: 600129

Table truncated, full table size 27692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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