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Sample GSM2593119 Query DataSets for GSM2593119
Status Public on May 01, 2017
Title case3_S_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 35
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.0856041
rs3094315-131_B_F_1857408493 0 0.6076868
rs3131972-131_T_R_1857421833 0.4347781 0.2736091
rs12562034-131_B_R_1858595326 0.5921332 0.3929228
rs12124819-131_B_R_1857380364 0 0.2316982
rs11240777-131_T_F_1857259998 0.6979108 0.1410715
rs6681049-131_T_R_1858018399 0.7076938 0.2533618
rs4970383-131_T_R_1857736617 0.7156698 0.8145777
rs4475691-131_T_R_1857599365 0.9899036 0.05742578
rs7537756-131_T_F_1857298910 0.001067134 0.3025237
rs2272756-131_B_F_1857180676 0.969399 0.5170751
rs17160698-131_T_R_1856941558 0.0197436 0.04039759
rs3748597-131_T_R_1853475664 1 0.2378311
rs13303106-131_T_F_1857538098 0.3740731 0.6716662
rs28415373-131_T_R_1857337676 0.9973005 0.319513
rs28391282-131_T_F_1857337024 0.4227366 0.1057565
rs13303118-131_B_F_1857538100 0.01804752 -0.1021003
rs2341354-131_T_F_1858039701 0.9946934 -0.04263125
rs6665000-131_T_F_1857014860 0 0.4099158
rs2341362-131_B_R_1857209587 0.9969864 -0.000587354

Total number of rows: 600129

Table truncated, full table size 28200 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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