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Sample GSM2593117 Query DataSets for GSM2593117
Status Public on May 01, 2017
Title case3_Q_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 33
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.1007963
rs3094315-131_B_F_1857408493 0 0.5446209
rs3131972-131_T_R_1857421833 0.4480447 0.25428
rs12562034-131_B_R_1858595326 0.6617325 0.2859159
rs12124819-131_B_R_1857380364 0.002424079 0.3570402
rs11240777-131_T_F_1857259998 0.6856937 0.1758597
rs6681049-131_T_R_1858018399 0.7096269 0.4123242
rs4970383-131_T_R_1857736617 0.7171316 1.031738
rs4475691-131_T_R_1857599365 1 0.1337178
rs7537756-131_T_F_1857298910 0.002778923 0.4187543
rs2272756-131_B_F_1857180676 0.9444051 0.4765565
rs17160698-131_T_R_1856941558 0.02699216 0.1027594
rs3748597-131_T_R_1853475664 0.995351 0.3230567
rs13303106-131_T_F_1857538098 0.3465013 0.712009
rs28415373-131_T_R_1857337676 1 0.4252984
rs28391282-131_T_F_1857337024 0.3967889 0.1584564
rs13303118-131_B_F_1857538100 0.0135039 -0.1287441
rs2341354-131_T_F_1858039701 0.9998131 0.05606661
rs6665000-131_T_F_1857014860 0.002607266 0.496329
rs2341362-131_B_R_1857209587 0.995234 0.1810605

Total number of rows: 600129

Table truncated, full table size 28536 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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