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Sample GSM2593111 Query DataSets for GSM2593111
Status Public on May 01, 2017
Title case3_Liver_SNP
Sample type genomic
 
Source name Liver metastasis tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: Liver
tissue sample: liver metastasis tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 27
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.000675634 -0.09045973
rs3094315-131_B_F_1857408493 0 0.5335819
rs3131972-131_T_R_1857421833 0.4863222 0.08298792
rs12562034-131_B_R_1858595326 0.6304868 0.4337037
rs12124819-131_B_R_1857380364 0 0.1657527
rs11240777-131_T_F_1857259998 0.6994696 0.1853175
rs6681049-131_T_R_1858018399 0.7343341 0.320995
rs4970383-131_T_R_1857736617 0.7139215 1.009741
rs4475691-131_T_R_1857599365 0.9916049 -0.05392286
rs7537756-131_T_F_1857298910 0 0.2671357
rs2272756-131_B_F_1857180676 1 0.2343699
rs17160698-131_T_R_1856941558 0.01020883 -0.02800352
rs3748597-131_T_R_1853475664 0.9994877 0.2530417
rs13303106-131_T_F_1857538098 0.3348364 0.6861051
rs28415373-131_T_R_1857337676 1 0.4318697
rs28391282-131_T_F_1857337024 0.3061222 0.1665024
rs13303118-131_B_F_1857538100 0.008612474 -0.1194043
rs2341354-131_T_F_1858039701 0.9951968 0.04487234
rs6665000-131_T_F_1857014860 0 0.3528589
rs2341362-131_B_R_1857209587 0.9791601 0.1846174

Total number of rows: 600129

Table truncated, full table size 28203 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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