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Sample GSM2593110 Query DataSets for GSM2593110
Status Public on May 01, 2017
Title case3_J_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 26
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.03813773
rs3094315-131_B_F_1857408493 0 0.6119392
rs3131972-131_T_R_1857421833 0.5061402 0.1704277
rs12562034-131_B_R_1858595326 0.7059829 0.4400686
rs12124819-131_B_R_1857380364 0.008202508 0.2275465
rs11240777-131_T_F_1857259998 0.7012 0.2567735
rs6681049-131_T_R_1858018399 0.7228044 0.3208596
rs4970383-131_T_R_1857736617 0.7400402 0.9364356
rs4475691-131_T_R_1857599365 0.9858429 -0.01929219
rs7537756-131_T_F_1857298910 0.001852883 0.4072237
rs2272756-131_B_F_1857180676 1 0.1967336
rs17160698-131_T_R_1856941558 0 -0.03366204
rs3748597-131_T_R_1853475664 0.9972609 0.3848592
rs13303106-131_T_F_1857538098 0.3392259 0.6878681
rs28415373-131_T_R_1857337676 0.9863142 0.3268276
rs28391282-131_T_F_1857337024 0.3399642 0.1031144
rs13303118-131_B_F_1857538100 0.01578742 -0.07821934
rs2341354-131_T_F_1858039701 0.9912273 0.1273662
rs6665000-131_T_F_1857014860 0 0.250035
rs2341362-131_B_R_1857209587 0.9916208 0.03642333

Total number of rows: 600129

Table truncated, full table size 28213 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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