NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2593107 Query DataSets for GSM2593107
Status Public on May 01, 2017
Title case3_G2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 23
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.000900373 0.09399518
rs3094315-131_B_F_1857408493 0 0.7511095
rs3131972-131_T_R_1857421833 0.381155 0.3434516
rs12562034-131_B_R_1858595326 0.5923111 0.3329318
rs12124819-131_B_R_1857380364 0 0.3162778
rs11240777-131_T_F_1857259998 0.6495947 0.2295406
rs6681049-131_T_R_1858018399 0.6128462 0.4001362
rs4970383-131_T_R_1857736617 0.6035748 0.9954782
rs4475691-131_T_R_1857599365 0.9956737 0.118386
rs7537756-131_T_F_1857298910 0.001876621 0.4774827
rs2272756-131_B_F_1857180676 1 0.43508
rs17160698-131_T_R_1856941558 0.005884069 0.01219912
rs3748597-131_T_R_1853475664 1 0.2002676
rs13303106-131_T_F_1857538098 0.3871627 0.6644347
rs28415373-131_T_R_1857337676 1 0.395757
rs28391282-131_T_F_1857337024 0.4634375 0.1598482
rs13303118-131_B_F_1857538100 0.008653237 -0.1410288
rs2341354-131_T_F_1858039701 0.9851749 0.03120833
rs6665000-131_T_F_1857014860 0 0.6140435
rs2341362-131_B_R_1857209587 0.9850088 0.2403347

Total number of rows: 600129

Table truncated, full table size 28371 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap