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Sample GSM2593096 Query DataSets for GSM2593096
Status Public on May 01, 2017
Title case2_Liver2_SNP
Sample type genomic
 
Source name Liver metastasis tumor tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: Liver
tissue sample: liver metastasis tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 12
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.08803042
rs3094315-131_B_F_1857408493 0.473491 0.496323
rs3131972-131_T_R_1857421833 0.4758629 0.1450759
rs12562034-131_B_R_1858595326 0.9923862 -0.4826734
rs12124819-131_B_R_1857380364 0 0.1098557
rs11240777-131_T_F_1857259998 0.4499255 0.2674178
rs6681049-131_T_R_1858018399 0.9802682 0.1508435
rs4970383-131_T_R_1857736617 0.4995888 0.7681248
rs4475691-131_T_R_1857599365 0.4624556 0.186242
rs7537756-131_T_F_1857298910 0.4166209 0.6322433
rs2272756-131_B_F_1857180676 0.9911466 0.5286132
rs17160698-131_T_R_1856941558 0.01431199 0.1212549
rs3748597-131_T_R_1853475664 0.9968783 0.3195033
rs13303106-131_T_F_1857538098 0.9768686 0.5678513
rs28415373-131_T_R_1857337676 0.9727162 0.5723323
rs28391282-131_T_F_1857337024 0.4481391 0.2734526
rs13303118-131_B_F_1857538100 0.4519305 -0.03004854
rs2341354-131_T_F_1858039701 0.5313551 0.1358829
rs6665000-131_T_F_1857014860 0 0.5670974
rs2341362-131_B_R_1857209587 1 0.09471077

Total number of rows: 600129

Table truncated, full table size 28119 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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