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Sample GSM2593095 Query DataSets for GSM2593095
Status Public on May 01, 2017
Title case2_Liver1_SNP
Sample type genomic
 
Source name Liver metastasis tumor tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: Liver
tissue sample: liver metastasis tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 11
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.001309615 -0.1494907
rs3094315-131_B_F_1857408493 0.4699513 0.5172442
rs3131972-131_T_R_1857421833 0.4651152 0.2786998
rs12562034-131_B_R_1858595326 1 0.2670125
rs12124819-131_B_R_1857380364 0.02186733 0.2003016
rs11240777-131_T_F_1857259998 0.4778373 0.2304705
rs6681049-131_T_R_1858018399 0.9959304 0.2499571
rs4970383-131_T_R_1857736617 0.4479385 0.6708655
rs4475691-131_T_R_1857599365 0.4459818 0.2343367
rs7537756-131_T_F_1857298910 0.408922 0.6030663
rs2272756-131_B_F_1857180676 1 0.4926965
rs17160698-131_T_R_1856941558 0.01347953 0.1541127
rs3748597-131_T_R_1853475664 0.983696 0.3468026
rs13303106-131_T_F_1857538098 0.9955463 0.4762053
rs28415373-131_T_R_1857337676 0.9829677 0.50895
rs28391282-131_T_F_1857337024 0.4359588 0.1905703
rs13303118-131_B_F_1857538100 0.4361399 0.001670704
rs2341354-131_T_F_1858039701 0.5409908 0.07495432
rs6665000-131_T_F_1857014860 0 0.6142329
rs2341362-131_B_R_1857209587 0.9895626 0.2976475

Total number of rows: 600129

Table truncated, full table size 28249 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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