|
| Status |
Public on May 05, 2009 |
| Title |
Xba_JA.245 |
| Sample type |
genomic |
| |
|
| Source name |
human breast cancer, time: 22, status: 1
|
| Organism |
Homo sapiens |
| Characteristics |
sample_id: JA.245
age: 38
stage.t: T2
differentiation: poor
er: Neg
menopause: pre
pr: Neg
survival time (months): 22
status (0=no relapse, 1=relapse): 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
QIAamp DNA mini kit according to the manufacturer
|
| Label |
biotin
|
| Label protocol |
Biotinylated genomic DNA were prepared according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Biotinylated genomic DNA fragments were hybridized for 17 hr at 48C on Affy Human Mapping 100K Array sets.
|
| Scan protocol |
GeneChips were scanned using Affymetrix GeneChip scanner
|
| Description |
Gene copy data from breast cancer
|
| Data processing |
The data were analyzed with Affy GTYPE and CCNT 3.0 software to generate copy numbers for the probes.
|
| |
|
| Submission date |
Jan 08, 2008 |
| Last update date |
Jan 14, 2011 |
| Contact name |
Jack Yu |
| E-mail(s) |
[email protected]
|
| Phone |
858-320-3362
|
| Fax |
858-784-3182
|
| Organization name |
Veridex, LLC
|
| Street address |
3210 Merryfield Row
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL2005 |
| Series (1) |
| GSE10099 |
Multi-dimensional genomic analysis in breast cancer patients |
|
