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GEO accession:
Sample GSM252890
Query DataSets for GSM252890
Status
Public on Feb 11, 2008
Title
colon_control_rep1
Sample type
RNA
Channel 1
Source name
Stratagene Universal Mouse Reference
Organism
Mus musculus
Characteristics
Stratagene #740100
Extracted molecule
total RNA
Extraction protocol
commercial
Label
Cy3
Label protocol
standard
Channel 2
Source name
Control
Organism
Mus musculus
Characteristics
Control 1
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy
Label
Cy5
Label protocol
Agilent Low RNA Input Fluorescent Linear Amplification Kit
Hybridization protocol
as described in In situ Hybridization kit-plus
Scan protocol
Agilent scanner, manufacturer's protocol
Description
colon_control_rep1
Data processing
Agilent Feature Extraction software 8.5
Submission date
Dec 21, 2007
Last update date
Feb 11, 2008
Contact name
Alex Abbas
E-mail(s)
[email protected]
Organization name
Genentech, Inc.
Department
Bioinformatics
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL2872
Series (1)
GSE10010
IL-22 plays an indispensable role in early host defense against attaching and effacing (A/E) bacterial pathogens
Data table header descriptions
ID_REF
VALUE
log10 ratio (Cy5/Cy3)
Data table
ID_REF
VALUE
1
2
3
0.2185
4
-0.1755
5
-0.2813
6
-0.03873
7
8
-0.3796
9
-0.1773
10
0.1878
11
12
0.08678
13
-0.2296
14
15
-0.3381
16
-0.2271
17
0.1088
18
0.05048
19
0.4648
20
Total number of rows:
44290
Table truncated, full table size
555 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM252890.txt.gz
12.4 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
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