|
| Status |
Public on Apr 30, 2017 |
| Title |
FFPE embedded lymph node at baseline [CG_SNSA_madbID120527] |
| Sample type |
RNA |
| |
|
| Source name |
FFPE embedded lymph node at baseline
|
| Organism |
Homo sapiens |
| Characteristics |
subject status: Diffuse large B-cell lymphoma (DLBCL) patient
unique_subject_identifier: CG
response: PD
class: NR
subtype: ABC
progression_free_survival: 1.41273100616016
progression_free_survival_censor: 0
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
|
| Scan protocol |
Scanning was performed by the Affymetrix 3000 Scanner.
|
| Description |
gene expression data from DLBCL patient tumor
|
| Data processing |
data were analyzed using ArrayStudio by OmicSoft
|
| |
|
| Submission date |
Jan 24, 2017 |
| Last update date |
Apr 30, 2017 |
| Contact name |
Hsu-Ping Kuo |
| E-mail(s) |
[email protected]
|
| Phone |
4082153739
|
| Organization name |
Pharmacyclics
|
| Street address |
995 E Arques Ave
|
| City |
Sunnyvale |
| State/province |
CA |
| ZIP/Postal code |
94087 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE93984 |
Expression data from DLBCL tumor biopsies |
| GSE93986 |
Expression data from DLBCL tumor biopsies and TMD8 cell line |
|
| Relations |
| Reanalyzed by |
GSM2466139 |
