|
| Status |
Public on Jan 17, 2018 |
| Title |
E16.5_Cited1+_mRNA_Seq_1 |
| Sample type |
SRA |
| |
|
| Source name |
developing kidneys
|
| Organism |
Mus musculus |
| Characteristics |
strain: CFW
developing stage: E16.5
marker: Cited1+
genotype: Cited1tagRFP/+
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy micro kit (#74004)
Kapa stranded mRNA-Seq library (#KK8420)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Base call by bcl2fastq v. 2.17; adaptor and index sequences were trimmed
Fastq files were aligned using TopHat2
Gene-level quantification was presented as TPM and calculated by Partek Genomic Suite
Genome_build: mm10
Supplementary_files_format_and_content: txt files containing TPM values by gene
|
| |
|
| Submission date |
Oct 28, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Andrew P McMahon |
| E-mail(s) |
[email protected]
|
| Phone |
323-442-7847
|
| Organization name |
University of Southern California
|
| Department |
Stem Cell Biol & Regen Med
|
| Lab |
Andrew McMahon
|
| Street address |
1425 San Pablo St, BCC 312
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90033 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE89264 |
Transcriptional profile of mouse nephron progenitor cells |
| GSE90017 |
Transcriptional and cistromic profiling of mouse nephron progenitor cells |
|
| Relations |
| BioSample |
SAMN06034598 |
| SRA |
SRX2357495 |
