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Sample GSM228524 Query DataSets for GSM228524
Status Public on Sep 28, 2007
Title CGH WG-set_8of8 NA18505 vs. NA15510
Sample type genomic
 
Channel 1
Source name NA15510
Organism Homo sapiens
Characteristics http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM15510
female
Biomaterial provider Coriell
Treatment protocol Nimblegen kit
Growth protocol Nimblegen kit
Extracted molecule genomic DNA
Extraction protocol Nimblegen kit
Label Cy5
Label protocol Nimblegen kit
 
Channel 2
Source name NA18505
Organism Homo sapiens
Characteristics http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18505
female
Biomaterial provider Coriell
Treatment protocol Nimblegen kit
Growth protocol Nimblegen kit
Extracted molecule genomic DNA
Extraction protocol Nimblegen kit
Label Cy3
Label protocol Nimblegen kit
 
 
Hybridization protocol Nimblegen kit
Scan protocol Nimblegen protocol
Description hybridized at Nimblegen facilities in Iceland
Data processing Qspline normalization (Bioconductor)
 
Submission date Sep 10, 2007
Last update date Aug 14, 2011
Contact name Jan Oliver Korbel
Phone +1 203 432 5405
Fax +1 203 432 5175
URL http://bioinfo.mbb.yale.edu/array/
Organization name Yale University
Street address 266 Whitney Avenue
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL5821
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID_REF
VALUE Cy3/Cy5 log2 ratio (normalized)

Data table
ID_REF VALUE
CHR18P048217444 0.580
CHR18P048218140 0.464
CHR18P048218825 0.073
CHR18P048220902 -0.160
CHR18P048221606 -0.073
CHR18P048222321 0.215
CHR18P048223096 0.055
CHR18P048223705 0.450
CHR18P048224410 -0.009
CHR18P048225125 0.244
CHR18P048225900 -0.048
CHR18P048226580 -0.070
CHR18P048227220 0.465
CHR18P048227905 -0.377
CHR18P048228700 -0.006
CHR18P048230748 -0.196
CHR18P048231470 0.099
CHR18P048232190 0.287
CHR18P048232805 -0.002
CHR18P048233595 0.090

Total number of rows: 385567

Table truncated, full table size 8307 Kbytes.




Supplementary file Size Download File type/resource
GSM228524_130049_532.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM228524_130049_635.pair.gz 6.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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