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Sample GSM227987 Query DataSets for GSM227987
Status Public on Aug 20, 2011
Title P0*154_GPL97
Sample type RNA
 
Source name human myeloma cell P0*154_GPL97
Organism Homo sapiens
Characteristics human myeloma cell P0*154_GPL97
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL97
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1123.8 P
AFFX-BioB-M_at 2223.7 P
AFFX-BioB-3_at 1178.0 P
AFFX-BioC-5_at 3049.9 P
AFFX-BioC-3_at 2778.1 P
AFFX-BioDn-5_at 3562.9 P
AFFX-BioDn-3_at 19388.1 P
AFFX-CreX-5_at 29723.9 P
AFFX-CreX-3_at 49743.5 P
AFFX-DapX-5_at 82.8 M
AFFX-DapX-M_at 84.1 A
AFFX-DapX-3_at 21.9 A
AFFX-LysX-5_at 33.2 A
AFFX-LysX-M_at 130.9 A
AFFX-LysX-3_at 16.9 A
AFFX-PheX-5_at 9.1 A
AFFX-PheX-M_at 17.0 A
AFFX-PheX-3_at 46.0 A
AFFX-ThrX-5_at 178.2 A
AFFX-ThrX-M_at 34.1 A

Total number of rows: 22645

Table truncated, full table size 403 Kbytes.




Supplementary file Size Download File type/resource
GSM227987_U133B-P0154-01-A533.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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