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Sample GSM227789 Query DataSets for GSM227789
Status Public on Aug 20, 2011
Title P0*508_GPL96
Sample type RNA
 
Source name human myeloma cell P0*508_GPL96
Organism Homo sapiens
Characteristics human myeloma cell P0*508_GPL96
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL96
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 420.5 P
AFFX-BioB-M_at 679.7 P
AFFX-BioB-3_at 147.7 A
AFFX-BioC-5_at 1130.2 P
AFFX-BioC-3_at 1305.8 P
AFFX-BioDn-5_at 1110.0 P
AFFX-BioDn-3_at 6738.8 P
AFFX-CreX-5_at 8715.3 P
AFFX-CreX-3_at 15446.8 P
AFFX-DapX-5_at 75.5 A
AFFX-DapX-M_at 98.6 A
AFFX-DapX-3_at 5.8 A
AFFX-LysX-5_at 4.8 A
AFFX-LysX-M_at 131.6 A
AFFX-LysX-3_at 31.9 A
AFFX-PheX-5_at 35.2 A
AFFX-PheX-M_at 10.9 A
AFFX-PheX-3_at 47.7 A
AFFX-ThrX-5_at 24.2 A
AFFX-ThrX-M_at 120.5 A

Total number of rows: 22283

Table truncated, full table size 408 Kbytes.




Supplementary file Size Download File type/resource
GSM227789_U133A-P0508-01-B697.CEL.gz 2.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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