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Sample GSM218216 Query DataSets for GSM218216
Status Public on Oct 30, 2007
Title CSP-inducible_plus Dox_TNF_3
Sample type RNA
 
Source name CSP-inducible_plus Dox_TNF_3
Organism Homo sapiens
Characteristics CSP-inducible_plus Dox_TNF_3
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy cleanup
Label biotin
Label protocol 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using standard Affymetrix protocols
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description HeLa cells bearing the delta CS construct were first induced with doxycycline for 17 hours and then exposed to TNF-alpha (40ng/ml). RNA samples were collected after 6 hours
Data processing MAS5
 
Submission date Aug 15, 2007
Last update date Aug 28, 2018
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL570
Series (1)
GSE8784 Plasmodium Circumsporozoite Protein Promotes the Development of the Liver Stages of the Parasite
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-BioB-5_at 431.943
AFFX-BioB-M_at 498.3728
AFFX-BioB-3_at 344.805
AFFX-BioC-5_at 446.6198
AFFX-BioC-3_at 522.8027
AFFX-BioDn-5_at 3329.932
AFFX-BioDn-3_at 6191.046
AFFX-CreX-5_at 15510.2
AFFX-CreX-3_at 18686.97
AFFX-DapX-5_at 1211.122
AFFX-DapX-M_at 1948.218
AFFX-DapX-3_at 2333.091
AFFX-LysX-5_at 159.1809
AFFX-LysX-M_at 130.8682
AFFX-LysX-3_at 333.9519
AFFX-PheX-5_at 224.9519
AFFX-PheX-M_at 257.9838
AFFX-PheX-3_at 220.9857
AFFX-ThrX-5_at 211.9568
AFFX-ThrX-M_at 372.9403

Total number of rows: 54675

Table truncated, full table size 1053 Kbytes.




Supplementary file Size Download File type/resource
GSM218216.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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