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Sample GSM218215 Query DataSets for GSM218215
Status Public on Oct 30, 2007
Title CSP-inducible_plus Dox_TNF_2
Sample type RNA
 
Source name CSP-inducible_plus Dox_TNF_2
Organism Homo sapiens
Characteristics CSP-inducible_plus Dox_TNF_2
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy cleanup
Label biotin
Label protocol 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using standard Affymetrix protocols
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description HeLa cells bearing the delta CS construct were first induced with doxycycline for 17 hours and then exposed to TNF-alpha (40ng/ml). RNA samples were collected after 6 hours
Data processing MAS5
 
Submission date Aug 15, 2007
Last update date Aug 28, 2018
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL570
Series (1)
GSE8784 Plasmodium Circumsporozoite Protein Promotes the Development of the Liver Stages of the Parasite
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-BioB-5_at 412.0911
AFFX-BioB-M_at 485.3091
AFFX-BioB-3_at 363.7534
AFFX-BioC-5_at 399.405
AFFX-BioC-3_at 495.0226
AFFX-BioDn-5_at 3611.999
AFFX-BioDn-3_at 5147.876
AFFX-CreX-5_at 16833.28
AFFX-CreX-3_at 19342.21
AFFX-DapX-5_at 1274.232
AFFX-DapX-M_at 2202.247
AFFX-DapX-3_at 2400.624
AFFX-LysX-5_at 161.1879
AFFX-LysX-M_at 184.0977
AFFX-LysX-3_at 381.1029
AFFX-PheX-5_at 256.3257
AFFX-PheX-M_at 262.3335
AFFX-PheX-3_at 274.5536
AFFX-ThrX-5_at 299.0374
AFFX-ThrX-M_at 449.3472

Total number of rows: 54675

Table truncated, full table size 1053 Kbytes.




Supplementary file Size Download File type/resource
GSM218215.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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