|
| Status |
Public on Jul 21, 2017 |
| Title |
3 Tumour |
| Sample type |
RNA |
| |
|
| Source name |
Colon/rectum
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: tumour
|
| Treatment protocol |
Formal fixed paraffin embedded
|
| Growth protocol |
Surgical resections from colorectal cancers patients
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy FFPE Kit (Qiagen, UK) FFPE Kit (Qiagen, UK)
|
| Label |
biotin
|
| Label protocol |
Standard Illumina whole genome DASL HT Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina whole genome DASL HT Protocol
|
| Scan protocol |
iScan default settings
|
| Description |
FFPE tissue
|
| Data processing |
Normalised to average (no background subtraction) using genomestudio v1.9. Missing data imputed.
|
| |
|
| Submission date |
Mar 31, 2016 |
| Last update date |
Jul 21, 2017 |
| Contact name |
Muhammad Abdullah Alvi |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Cambridge
|
| Street address |
Addenbrooke's site
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0XZ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL14951 |
| Series (2) |
| GSE79793 |
Transcriptomic changes in signet ring cell colorectal cancer |
| GSE79794 |
DNA Methylation Profiling and Transcriptomic Changes in Signet Ring Cell Colorectal Cancer |
|
