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Sample GSM1894909 Query DataSets for GSM1894909
Status Public on Aug 09, 2018
Title Unknown_71
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_71_Detection_Pval

Data table
ID_REF VALUE Unknown_71_Detection_Pval
ILMN_1762337 5.63988423398004 0.93808
ILMN_2055271 6.11410066499498 0.04743
ILMN_1736007 5.98301142189914 0.26087
ILMN_2383229 5.58353725482085 0.97497
ILMN_1806310 6.08454209761411 0.06851
ILMN_1779670 5.9036429291047 0.45191
ILMN_2321282 6.17791155076579 0.01186
ILMN_1671474 5.94889904198467 0.34256
ILMN_1772582 5.90625001406132 0.44401
ILMN_1735698 5.82010774580231 0.66008
ILMN_1653355 6.15893126327412 0.01976
ILMN_1717783 5.83659127850805 0.61265
ILMN_1705025 5.63372527887025 0.94466
ILMN_1814316 5.91658514034082 0.41634
ILMN_2359168 5.91143699414511 0.43742
ILMN_1731507 5.69722262080727 0.89196
ILMN_1787689 6.06323194797363 0.1054
ILMN_1745607 6.03307996366386 0.1581
ILMN_2136495 5.61509906833317 0.95389
ILMN_1668111 5.8062562222092 0.69697

Total number of rows: 48803

Table truncated, full table size 1799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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