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Sample GSM1894899 Query DataSets for GSM1894899
Status Public on Aug 09, 2018
Title Unknown_61
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_61_Detection_Pval

Data table
ID_REF VALUE Unknown_61_Detection_Pval
ILMN_1762337 5.80696898105378 0.66008
ILMN_2055271 6.10939336595087 0.05138
ILMN_1736007 5.9073393919093 0.42819
ILMN_2383229 5.69038436511318 0.87747
ILMN_1806310 5.66596365129939 0.91304
ILMN_1779670 5.69038436511318 0.88011
ILMN_2321282 6.06546012807347 0.11462
ILMN_1671474 6.06071800387957 0.11989
ILMN_1772582 5.90938766458631 0.42292
ILMN_1735698 5.99573805421683 0.23188
ILMN_1653355 6.11253003846733 0.04743
ILMN_1717783 5.5315096216482 0.98814
ILMN_1705025 5.92359470937884 0.39394
ILMN_1814316 5.78785233397274 0.70619
ILMN_2359168 5.78572163391414 0.70619
ILMN_1731507 5.5720926043303 0.97892
ILMN_1787689 6.05466377322305 0.1278
ILMN_1745607 5.65925432684843 0.917
ILMN_2136495 5.67265135756452 0.90119
ILMN_1668111 5.60240906595732 0.96179

Total number of rows: 48803

Table truncated, full table size 1797 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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