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Sample GSM1894867 Query DataSets for GSM1894867
Status Public on Aug 09, 2018
Title Unknown_29
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_29_Detection_Pval

Data table
ID_REF VALUE Unknown_29_Detection_Pval
ILMN_1762337 5.84236501034373 0.53491
ILMN_2055271 6.27789430551716 0.0303
ILMN_1736007 5.92441480878857 0.34387
ILMN_2383229 5.75303972494029 0.73386
ILMN_1806310 5.94305858860341 0.31225
ILMN_1779670 5.97234282346999 0.25955
ILMN_2321282 6.06410468079122 0.13966
ILMN_1671474 6.15476420902538 0.06851
ILMN_1772582 5.93935243912859 0.31752
ILMN_1735698 6.03635077505459 0.1726
ILMN_1653355 6.68819941658791 0.00527
ILMN_1717783 5.9650789484858 0.27536
ILMN_1705025 5.88227661819482 0.43742
ILMN_1814316 5.74859494417265 0.73781
ILMN_2359168 5.91308500343303 0.37813
ILMN_1731507 5.76626829136114 0.70356
ILMN_1787689 6.0117233967874 0.20685
ILMN_1745607 6.06410468079122 0.13966
ILMN_2136495 5.3264800895611 0.99868
ILMN_1668111 5.75303972494029 0.73518

Total number of rows: 48803

Table truncated, full table size 1833 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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