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Sample GSM1894866 Query DataSets for GSM1894866
Status Public on Aug 09, 2018
Title Unknown_28
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_28_Detection_Pval

Data table
ID_REF VALUE Unknown_28_Detection_Pval
ILMN_1762337 5.65761172437276 0.86298
ILMN_2055271 6.13593132779438 0.03953
ILMN_1736007 5.93071011001144 0.33465
ILMN_2383229 5.82268578686858 0.57049
ILMN_1806310 5.54023306472458 0.95916
ILMN_1779670 5.93071011001144 0.33465
ILMN_2321282 6.30374265587757 0.00527
ILMN_1671474 5.99437788862198 0.22266
ILMN_1772582 5.78069354476822 0.66798
ILMN_1735698 6.0816695846538 0.08432
ILMN_1653355 6.18222433464526 0.02108
ILMN_1717783 5.80181327748599 0.62055
ILMN_1705025 5.95297909313577 0.29381
ILMN_1814316 5.90761071830051 0.38867
ILMN_2359168 5.57861270995503 0.93544
ILMN_1731507 6.01918448480653 0.18841
ILMN_1787689 5.75501647255903 0.72727
ILMN_1745607 5.6022019895365 0.91831
ILMN_2136495 5.73769223784101 0.74835
ILMN_1668111 5.48613488110961 0.97497

Total number of rows: 48803

Table truncated, full table size 1783 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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