NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1894861 Query DataSets for GSM1894861
Status Public on Aug 09, 2018
Title Unknown_23
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_23_Detection_Pval

Data table
ID_REF VALUE Unknown_23_Detection_Pval
ILMN_1762337 5.83709876476714 0.52306
ILMN_2055271 6.30928830946818 0.01581
ILMN_1736007 5.99314656188221 0.18709
ILMN_2383229 5.39669244701304 0.99868
ILMN_1806310 5.84141591422475 0.51779
ILMN_1779670 6.00811274309813 0.16864
ILMN_2321282 5.94218067629991 0.28063
ILMN_1671474 5.97782484060125 0.22003
ILMN_1772582 5.73547084178315 0.75626
ILMN_1735698 5.94621451546073 0.27404
ILMN_1653355 6.38859486015685 0.00658999999999998
ILMN_1717783 5.73094482547758 0.76285
ILMN_1705025 5.98168728539596 0.20817
ILMN_1814316 5.6193120504674 0.89987
ILMN_2359168 6.02628811957321 0.15283
ILMN_1731507 5.56603601826421 0.9473
ILMN_1787689 6.09367511135076 0.0948600000000001
ILMN_1745607 5.85002629951828 0.50461
ILMN_2136495 5.98934852955492 0.19763
ILMN_1668111 5.43918938694027 0.98814

Total number of rows: 48803

Table truncated, full table size 1809 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap