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Sample GSM1894846 Query DataSets for GSM1894846
Status Public on Aug 09, 2018
Title Unknown_08
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_08_Detection_Pval

Data table
ID_REF VALUE Unknown_08_Detection_Pval
ILMN_1762337 5.8140994189928 0.5863
ILMN_2055271 6.01462497914409 0.16074
ILMN_1736007 6.11188348229124 0.03294
ILMN_2383229 5.60685726324281 0.91963
ILMN_1806310 5.80064997068614 0.61133
ILMN_1779670 6.0723005970513 0.07378
ILMN_2321282 6.27681429554276 0.00922000000000001
ILMN_1671474 6.09989938006774 0.03557
ILMN_1772582 5.87547472608623 0.41634
ILMN_1735698 6.14751836920713 0.02372
ILMN_1653355 6.11662330500389 0.03162
ILMN_1717783 5.74094439643184 0.73254
ILMN_1705025 5.92983854712723 0.3083
ILMN_1814316 5.79256027418919 0.62451
ILMN_2359168 5.92983854712723 0.30698
ILMN_1731507 5.77904262139746 0.65481
ILMN_1787689 5.92481238610189 0.31621
ILMN_1745607 5.63531050323924 0.89328
ILMN_2136495 6.00086528505446 0.17787
ILMN_1668111 5.62680689318843 0.90646

Total number of rows: 48803

Table truncated, full table size 1786 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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