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Sample GSM1894835 Query DataSets for GSM1894835
Status Public on Aug 09, 2018
Title Definite Viral_26
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_26_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_26_Detection_Pval
ILMN_1762337 5.85173841154413 0.51779
ILMN_2055271 6.13033637599932 0.03821
ILMN_1736007 5.97417823196308 0.25955
ILMN_2383229 6.01942501084354 0.17523
ILMN_1806310 5.9760561440266 0.2556
ILMN_1779670 5.90978816197946 0.38472
ILMN_2321282 6.1351193110142 0.03294
ILMN_1671474 6.00725825440461 0.20422
ILMN_1772582 5.73978941557266 0.76021
ILMN_1735698 6.08041918016101 0.0750999999999999
ILMN_1653355 5.99402091750444 0.2253
ILMN_1717783 5.70033069175608 0.83794
ILMN_1705025 6.01194597349757 0.19499
ILMN_1814316 5.77309981414375 0.69433
ILMN_2359168 5.88004350426027 0.45191
ILMN_1731507 5.60093217581094 0.92754
ILMN_1787689 5.99402091750444 0.2253
ILMN_1745607 5.56039529530349 0.95389
ILMN_2136495 5.75526420231604 0.72859
ILMN_1668111 5.64871827633005 0.89592

Total number of rows: 48803

Table truncated, full table size 1788 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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