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Sample GSM1894824 Query DataSets for GSM1894824
Status Public on Aug 09, 2018
Title Definite Viral_15
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_15_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_15_Detection_Pval
ILMN_1762337 5.6667810789478 0.89065
ILMN_2055271 6.23052561621533 0.02899
ILMN_1736007 5.79098991358397 0.6693
ILMN_2383229 5.96022181420509 0.30303
ILMN_1806310 6.00059774059426 0.2332
ILMN_1779670 6.03224979835141 0.17655
ILMN_2321282 6.10518697859049 0.09354
ILMN_1671474 5.92807612705683 0.36627
ILMN_1772582 5.94814239262215 0.32675
ILMN_1735698 5.96729357289348 0.28854
ILMN_1653355 6.20996646175974 0.03294
ILMN_1717783 5.89090065903327 0.43874
ILMN_1705025 5.90980367229746 0.40316
ILMN_1814316 5.7359886154149 0.78129
ILMN_2359168 5.8277613879231 0.59552
ILMN_1731507 5.77517091788921 0.70224
ILMN_1787689 6.06703216369272 0.12648
ILMN_1745607 5.69505778189348 0.84585
ILMN_2136495 5.6303042533824 0.92754
ILMN_1668111 5.65958674558539 0.89855

Total number of rows: 48803

Table truncated, full table size 1814 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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