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Sample GSM1894822 Query DataSets for GSM1894822
Status Public on Aug 09, 2018
Title Definite Viral_13
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_13_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_13_Detection_Pval
ILMN_1762337 5.77745974776539 0.65349
ILMN_2055271 5.83603266779327 0.50198
ILMN_1736007 6.00495836316527 0.18182
ILMN_2383229 5.64073533707452 0.90119
ILMN_1806310 6.03272382040223 0.14097
ILMN_1779670 5.88116154266012 0.40184
ILMN_2321282 6.11513346923045 0.04084
ILMN_1671474 5.81658400323741 0.55204
ILMN_1772582 6.12637102535868 0.02899
ILMN_1735698 5.84573144901488 0.47299
ILMN_1653355 6.12335575165626 0.03294
ILMN_1717783 6.04092708911852 0.13043
ILMN_1705025 5.98678039554586 0.20949
ILMN_1814316 5.63391128988329 0.91568
ILMN_2359168 5.81983037014287 0.54545
ILMN_1731507 5.55758907442172 0.97233
ILMN_1787689 5.76105821012714 0.71278
ILMN_1745607 5.89078070392315 0.37681
ILMN_2136495 6.01232304549594 0.16864
ILMN_1668111 5.64414097081893 0.89855

Total number of rows: 48803

Table truncated, full table size 1786 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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